If a (newick) phylogenetic tree file has been provided, the visualisation of the MSA used in the calculations is shown below. The two chosen groups (i.e. ‘ingroup’ / species of interest, and outgroup) are highlighted in the tree. The outgroup, used in the computation or not, is the outgroup, which together with the reference species of interest coalesce at the node of interest, from which the ancestral sequence have been extracted. Most recent common ancestor (MRCA) is highlighted in purple and labeled. The rest of the clades in the alignment are shown in lighter grey. Regardless whether a reconstructed ancestral sequence at a node, or an outgroup, has been chosen as the ancestor, the MRCA will be highlighted.
If an ideogram (often possible to download on the UCSC website, here) has been provided, the distribution of simulated variants is shown across the genome of the species of interest. The grey distribution corresponds to the total amount of simulated variants, whereas the red distribution corresponds to the subset that is overlapping with a corresponding non-gap ancestral sequence. If there is no forced sub-sampling due to lack of ancestral sequence, the distribution will be fully red.
If an ideogram (often possible to download on the UCSC website, here) has been provided, the distribution of derived variants is shown across the genome of the species of interest. The distribution of derived variants across the genome is shown in red.
| Size of ref. genome | Size of reconstructed genome | Fraction covered of ref. genome | |
|---|---|---|---|
| 1 | 274 330 532 | 80 611 829 | 0.29 |
| 2 | 151 935 994 | 38 663 251 | 0.25 |
| 3 | 132 848 913 | 34 945 783 | 0.26 |
| 4 | 130 910 915 | 35 091 582 | 0.27 |
| 5 | 104 526 007 | 26 834 351 | 0.26 |
| 6 | 170 843 587 | 47 867 152 | 0.28 |
| 7 | 121 844 099 | 33 714 588 | 0.28 |
| 8 | 138 966 237 | 37 434 940 | 0.27 |
| 9 | 139 512 083 | 38 643 950 | 0.28 |
| 10 | 69 359 453 | 16 339 902 | 0.24 |
| 11 | 79 169 978 | 20 009 040 | 0.25 |
| 12 | 61 602 749 | 16 530 035 | 0.27 |
| 13 | 208 334 590 | 57 962 776 | 0.28 |
| 14 | 141 755 446 | 36 884 151 | 0.26 |
| 15 | 140 412 725 | 41 640 933 | 0.30 |
| 16 | 79 944 280 | 24 559 472 | 0.31 |
| 17 | 63 494 081 | 5 666 210 | 0.09 |
| 18 | 55 982 971 | 16 527 503 | 0.30 |
| X | 125 939 595 | 24 847 024 | 0.20 |
| No of sim. SNPs | Number of sim. SNPs overlapping ancestral seq. | Fraction of sim. SNPs overlapping ancestral seq. | Number of derived variants | |
|---|---|---|---|---|
| 1 | 21 049 581 | 6 197 104 | 0.29 | 6 523 182 |
| 2 | 10 922 570 | 2 776 068 | 0.25 | 3 168 700 |
| 3 | 10 716 125 | 2 780 458 | 0.26 | 2 963 027 |
| 4 | 9 861 538 | 2 642 938 | 0.27 | 2 864 275 |
| 5 | 7 697 975 | 1 928 296 | 0.25 | 2 197 342 |
| 6 | 14 204 784 | 3 952 557 | 0.28 | 4 010 563 |
| 7 | 9 473 014 | 2 591 167 | 0.27 | 2 735 212 |
| 8 | 10 702 217 | 2 906 715 | 0.27 | 3 163 402 |
| 9 | 10 928 631 | 3 027 617 | 0.28 | 3 223 319 |
| 10 | 5 497 713 | 1 288 943 | 0.23 | 1 454 144 |
| 11 | 5 950 343 | 1 495 689 | 0.25 | 1 666 730 |
| 12 | 5 208 975 | 1 395 306 | 0.27 | 1 383 417 |
| 13 | 14 870 885 | 4 119 824 | 0.28 | 4 628 807 |
| 14 | 10 378 178 | 2 700 388 | 0.26 | 3 017 357 |
| 15 | 10 815 697 | 3 195 461 | 0.30 | 3 351 588 |
| 16 | 6 672 360 | 2 043 644 | 0.31 | 2 033 883 |
| 17 | 2 489 724 | 216 672 | 0.09 | 471 655 |
| 18 | 4 992 972 | 1 467 009 | 0.29 | 1 417 910 |
| X | 6 418 582 | 1 281 998 | 0.20 | 1 848 383 |
| No. of SNPs | Fraction transitions | Fraction transversions | Fraction CpGs | Fraction non-CpGs (1-CpGs) | |
|---|---|---|---|---|---|
| 1 | 6 197 104 | 0.51 | 0.33 | 0.16 | 0.84 |
| 2 | 2 776 068 | 0.48 | 0.31 | 0.21 | 0.79 |
| 3 | 2 780 458 | 0.47 | 0.30 | 0.23 | 0.77 |
| 4 | 2 642 938 | 0.49 | 0.32 | 0.19 | 0.81 |
| 5 | 1 928 296 | 0.49 | 0.32 | 0.20 | 0.80 |
| 6 | 3 952 557 | 0.47 | 0.30 | 0.23 | 0.77 |
| 7 | 2 591 167 | 0.49 | 0.31 | 0.20 | 0.80 |
| 8 | 2 906 715 | 0.50 | 0.33 | 0.18 | 0.82 |
| 9 | 3 027 617 | 0.50 | 0.32 | 0.18 | 0.82 |
| 10 | 1 288 943 | 0.47 | 0.30 | 0.23 | 0.77 |
| 11 | 1 495 689 | 0.48 | 0.32 | 0.20 | 0.80 |
| 12 | 1 395 306 | 0.44 | 0.28 | 0.27 | 0.73 |
| 13 | 4 119 824 | 0.51 | 0.34 | 0.15 | 0.85 |
| 14 | 2 700 388 | 0.48 | 0.31 | 0.21 | 0.79 |
| 15 | 3 195 461 | 0.51 | 0.34 | 0.15 | 0.85 |
| 16 | 2 043 644 | 0.51 | 0.33 | 0.15 | 0.85 |
| 17 | 216 672 | 0.32 | 0.21 | 0.47 | 0.53 |
| 18 | 1 467 009 | 0.48 | 0.31 | 0.21 | 0.79 |
| X | 1 281 998 | 0.46 | 0.30 | 0.24 | 0.76 |
##### Table with corresponding data:
| No. of SNPs | Fraction transitions | Fraction transversions | |
|---|---|---|---|
| 1 | 6 523 182 | 0.61 | 0.39 |
| 2 | 3 168 700 | 0.61 | 0.39 |
| 3 | 2 963 027 | 0.60 | 0.40 |
| 4 | 2 864 275 | 0.61 | 0.39 |
| 5 | 2 197 342 | 0.61 | 0.39 |
| 6 | 4 010 563 | 0.61 | 0.39 |
| 7 | 2 735 212 | 0.61 | 0.39 |
| 8 | 3 163 402 | 0.60 | 0.40 |
| 9 | 3 223 319 | 0.61 | 0.39 |
| 10 | 1 454 144 | 0.58 | 0.42 |
| 11 | 1 666 730 | 0.59 | 0.41 |
| 12 | 1 383 417 | 0.60 | 0.40 |
| 13 | 4 628 807 | 0.62 | 0.38 |
| 14 | 3 017 357 | 0.61 | 0.39 |
| 15 | 3 351 588 | 0.61 | 0.39 |
| 16 | 2 033 883 | 0.61 | 0.39 |
| 17 | 471 655 | 0.60 | 0.40 |
| 18 | 1 417 910 | 0.60 | 0.40 |
| X | 1 848 383 | 0.60 | 0.40 |
Number of mutations, fractions, and substitution rates. To make sure the simulation was performed as expected, the leftmost part is the calculated numbers and rates in the parameter files, including the total number of simulated variants per chromosome, based on information from the ancestor and reference species. The middle part is the (re)calculated numbers and rates based on the total number of simulated variants. The rightmost part is the (re)calculated numbers and rates within the subset with a corresponding non-gap ancestral sequence. The comparison of parameters and simulated variants is to make sure that the simulation has been perform as intended, and the comparison between total set and the subset is to make sure that the distribution is the same even if the variants are forced to be down-sampled due to the lack of an available ancestral sequence.
|
Parameter files
|
Simulated variant file
|
Simulated variant file
(filtered for positions with a corresponding non-gap ancestral position) |
||||||
|---|---|---|---|---|---|---|---|---|
| Chromosome considered: 1 | Chromosome considered: 1 | Chromosome considered: 1 | ||||||
| Total mut: 8517711 | Total mut: 17753709 | Total mut: 5217985 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 617539 | 1413423 | 512332 | 1391838 | 3023044 | 1009484 | 409330 | 887135 | 296136 |
| 7.25% | 16.59% | 6.01% | 7.84% | 17.03% | 5.69% | 7.84% | 17.00% | 5.68% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 284204 | 249661 | 1184303 | 557427 | 553348 | 2335376 | 164672 | 163566 | 689363 |
| 3.34% | 2.93% | 13.90% | 3.14% | 3.12% | 13.15% | 3.16% | 3.13% | 13.21% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 1183741 | 250146 | 285643 | 2340131 | 555019 | 557495 | 689485 | 163256 | 164203 |
| 13.90% | 2.94% | 3.35% | 13.18% | 3.13% | 3.14% | 13.21% | 3.13% | 3.15% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 511433 | 1408898 | 616388 | 1011685 | 3022276 | 1396586 | 296136 | 886393 | 408310 |
| 6.00% | 16.54% | 7.24% | 5.70% | 17.02% | 7.87% | 5.68% | 16.99% | 7.83% |
| Total CpG mut: 1101137 | Total CpG mut: 3295872 | Total CpG mut: 979119 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 99284 | 86004 | 365221 | 290867 | 284143 | 1072705 | 86926 | 84095 | 318342 |
| 9.02% | 7.81% | 33.17% | 8.83% | 8.62% | 32.55% | 8.88% | 8.59% | 32.51% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 365004 | 86065 | 99559 | 1073134 | 284804 | 290219 | 318788 | 84381 | 86587 |
| 33.15% | 7.82% | 9.04% | 32.56% | 8.64% | 8.81% | 32.56% | 8.62% | 8.84% |
| Chromosome considered: 2 | Chromosome considered: 2 | Chromosome considered: 2 | ||||||
| Total mut: 4162168 | Total mut: 26366504 | Total mut: 7413230 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 324455 | 701973 | 235396 | 2044410 | 4439741 | 1481866 | 578000 | 1251259 | 417279 |
| 7.80% | 16.87% | 5.66% | 7.75% | 16.84% | 5.62% | 7.80% | 16.88% | 5.63% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 130685 | 134173 | 553280 | 840850 | 835858 | 3527871 | 236107 | 234856 | 988890 |
| 3.14% | 3.22% | 13.29% | 3.19% | 3.17% | 13.38% | 3.18% | 3.17% | 13.34% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 554275 | 134487 | 130499 | 3533274 | 838346 | 842493 | 988847 | 234705 | 235664 |
| 13.32% | 3.23% | 3.14% | 13.40% | 3.18% | 3.20% | 13.34% | 3.17% | 3.18% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 236127 | 702090 | 324728 | 1485979 | 4443961 | 2051855 | 418038 | 1252642 | 576943 |
| 5.67% | 16.87% | 7.80% | 5.64% | 16.85% | 7.78% | 5.64% | 16.90% | 7.78% |
| Total CpG mut: 554956 | Total CpG mut: 5605647 | Total CpG mut: 1559942 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 48335 | 47911 | 181200 | 494765 | 483682 | 1825156 | 137972 | 134497 | 507441 |
| 8.71% | 8.63% | 32.65% | 8.83% | 8.63% | 32.56% | 8.84% | 8.62% | 32.53% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 181355 | 48104 | 48051 | 1823932 | 484365 | 493747 | 507946 | 134511 | 137575 |
| 32.68% | 8.67% | 8.66% | 32.54% | 8.64% | 8.81% | 32.56% | 8.62% | 8.82% |
| Chromosome considered: 3 | Chromosome considered: 3 | Chromosome considered: 3 | ||||||
| Total mut: 3968978 | Total mut: 34530717 | Total mut: 9563063 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 337082 | 696480 | 213655 | 2648692 | 5750302 | 1919494 | 738289 | 1599520 | 533811 |
| 8.49% | 17.55% | 5.38% | 7.67% | 16.65% | 5.56% | 7.72% | 16.73% | 5.58% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 114362 | 131436 | 492332 | 1120095 | 1112484 | 4697396 | 308599 | 307023 | 1293072 |
| 2.88% | 3.31% | 12.40% | 3.24% | 3.22% | 13.60% | 3.23% | 3.21% | 13.52% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 490564 | 131204 | 114026 | 4705633 | 1115990 | 1122327 | 1294148 | 307200 | 308289 |
| 12.36% | 3.31% | 2.87% | 13.63% | 3.23% | 3.25% | 13.53% | 3.21% | 3.22% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 213962 | 696730 | 337145 | 1924868 | 5756640 | 2656796 | 534676 | 1600756 | 737680 |
| 5.39% | 17.55% | 8.49% | 5.57% | 16.67% | 7.69% | 5.59% | 16.74% | 7.71% |
| Total CpG mut: 544278 | Total CpG mut: 8157559 | Total CpG mut: 2190567 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 46140 | 52512 | 173904 | 720285 | 704236 | 2654870 | 193595 | 189215 | 712567 |
| 8.48% | 9.65% | 31.95% | 8.83% | 8.63% | 32.54% | 8.84% | 8.64% | 32.53% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 173903 | 51984 | 45835 | 2654333 | 705501 | 718334 | 712923 | 189298 | 192969 |
| 31.95% | 9.55% | 8.42% | 32.54% | 8.65% | 8.81% | 32.55% | 8.64% | 8.81% |
| Chromosome considered: 4 | Chromosome considered: 4 | Chromosome considered: 4 | ||||||
| Total mut: 3832191 | Total mut: 42464311 | Total mut: 11690736 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 318833 | 683813 | 215942 | 3259153 | 7075786 | 2361844 | 901433 | 1954783 | 652124 |
| 8.32% | 17.84% | 5.63% | 7.68% | 16.66% | 5.56% | 7.71% | 16.72% | 5.58% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 109297 | 114683 | 472660 | 1375690 | 1368194 | 5773243 | 376905 | 375479 | 1582087 |
| 2.85% | 2.99% | 12.33% | 3.24% | 3.22% | 13.60% | 3.22% | 3.21% | 13.53% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 473196 | 115866 | 109776 | 5783237 | 1370934 | 1379441 | 1583563 | 375578 | 377692 |
| 12.35% | 3.02% | 2.86% | 13.62% | 3.23% | 3.25% | 13.55% | 3.21% | 3.23% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 215703 | 683912 | 318510 | 2368376 | 7080772 | 3267641 | 653933 | 1956017 | 901142 |
| 5.63% | 17.85% | 8.31% | 5.58% | 16.67% | 7.70% | 5.59% | 16.73% | 7.71% |
| Total CpG mut: 437795 | Total CpG mut: 10085503 | Total CpG mut: 2705832 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 38671 | 38225 | 141567 | 890912 | 870080 | 3282201 | 239438 | 233604 | 880113 |
| 8.83% | 8.73% | 32.34% | 8.83% | 8.63% | 32.54% | 8.85% | 8.63% | 32.53% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 142030 | 38574 | 38728 | 3281853 | 872692 | 887765 | 881047 | 233712 | 237918 |
| 32.44% | 8.81% | 8.85% | 32.54% | 8.65% | 8.80% | 32.56% | 8.64% | 8.79% |
| Chromosome considered: 5 | Chromosome considered: 5 | Chromosome considered: 5 | ||||||
| Total mut: 2911411 | Total mut: 48471012 | Total mut: 13238806 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 234917 | 509748 | 166665 | 3716542 | 8068888 | 2694239 | 1021072 | 2215278 | 739442 |
| 8.07% | 17.51% | 5.72% | 7.67% | 16.65% | 5.56% | 7.71% | 16.73% | 5.59% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 85818 | 85538 | 370882 | 1571693 | 1564104 | 6600198 | 425522 | 424659 | 1789295 |
| 2.95% | 2.94% | 12.74% | 3.24% | 3.23% | 13.62% | 3.21% | 3.21% | 13.52% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 371363 | 85432 | 86751 | 6610499 | 1566913 | 1575899 | 1790488 | 424544 | 426848 |
| 12.76% | 2.93% | 2.98% | 13.64% | 3.23% | 3.25% | 13.52% | 3.21% | 3.22% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 167071 | 511448 | 235778 | 2700481 | 8075347 | 3726209 | 741410 | 2218539 | 1021709 |
| 5.74% | 17.57% | 8.10% | 5.57% | 16.66% | 7.69% | 5.60% | 16.76% | 7.72% |
| Total CpG mut: 326558 | Total CpG mut: 11776777 | Total CpG mut: 3086058 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 28942 | 27562 | 106755 | 1040064 | 1016296 | 3832471 | 272853 | 266684 | 1003503 |
| 8.86% | 8.44% | 32.69% | 8.83% | 8.63% | 32.54% | 8.84% | 8.64% | 32.52% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 106994 | 27442 | 28863 | 3832420 | 1018532 | 1036994 | 1005154 | 266454 | 271410 |
| 32.76% | 8.40% | 8.84% | 32.54% | 8.65% | 8.81% | 32.57% | 8.63% | 8.79% |
| Chromosome considered: 6 | Chromosome considered: 6 | Chromosome considered: 6 | ||||||
| Total mut: 5313121 | Total mut: 59381443 | Total mut: 16300771 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 441499 | 927342 | 283818 | 4516592 | 9805897 | 3274848 | 1246855 | 2706953 | 903549 |
| 8.31% | 17.45% | 5.34% | 7.61% | 16.51% | 5.51% | 7.65% | 16.61% | 5.54% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 155586 | 177546 | 671887 | 1949676 | 1939592 | 8184434 | 530691 | 529328 | 2231662 |
| 2.93% | 3.34% | 12.65% | 3.28% | 3.27% | 13.78% | 3.26% | 3.25% | 13.69% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 671004 | 177634 | 154936 | 8193971 | 1942793 | 1953217 | 2231058 | 529581 | 531304 |
| 12.63% | 3.34% | 2.92% | 13.80% | 3.27% | 3.29% | 13.69% | 3.25% | 3.26% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 284456 | 927104 | 440309 | 3281363 | 9811226 | 4527834 | 905252 | 2706777 | 1247761 |
| 5.35% | 17.45% | 8.29% | 5.53% | 16.52% | 7.62% | 5.55% | 16.61% | 7.65% |
| Total CpG mut: 752069 | Total CpG mut: 15071130 | Total CpG mut: 3976650 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 63124 | 70380 | 242622 | 1330610 | 1300005 | 4905822 | 351282 | 343329 | 1293629 |
| 8.39% | 9.36% | 32.26% | 8.83% | 8.63% | 32.55% | 8.83% | 8.63% | 32.53% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 242092 | 70987 | 62864 | 4904134 | 1303120 | 1327439 | 1295005 | 343328 | 350077 |
| 32.19% | 9.44% | 8.36% | 32.54% | 8.65% | 8.81% | 32.57% | 8.63% | 8.80% |
| Chromosome considered: 7 | Chromosome considered: 7 | Chromosome considered: 7 | ||||||
| Total mut: 3619980 | Total mut: 66858569 | Total mut: 18372922 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 294871 | 628222 | 201470 | 5078781 | 11027110 | 3681558 | 1403640 | 3046744 | 1017073 |
| 8.15% | 17.35% | 5.57% | 7.60% | 16.49% | 5.51% | 7.64% | 16.58% | 5.54% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 106266 | 112621 | 468053 | 2200653 | 2187781 | 9233621 | 599429 | 597428 | 2519966 |
| 2.94% | 3.11% | 12.93% | 3.29% | 3.27% | 13.81% | 3.26% | 3.25% | 13.72% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 468815 | 112833 | 106391 | 9245638 | 2191271 | 2203117 | 2520436 | 597982 | 600205 |
| 12.95% | 3.12% | 2.94% | 13.83% | 3.28% | 3.30% | 13.72% | 3.25% | 3.27% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 202027 | 622822 | 295589 | 3688239 | 11031151 | 5089649 | 1019039 | 3046623 | 1404357 |
| 5.58% | 17.21% | 8.17% | 5.52% | 16.50% | 7.61% | 5.55% | 16.58% | 7.64% |
| Total CpG mut: 474644 | Total CpG mut: 17067018 | Total CpG mut: 4495666 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 40120 | 41425 | 155459 | 1506779 | 1471208 | 5555969 | 396872 | 387304 | 1463266 |
| 8.45% | 8.73% | 32.75% | 8.83% | 8.62% | 32.55% | 8.83% | 8.62% | 32.55% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 155659 | 41508 | 40473 | 5554998 | 1474593 | 1503471 | 1464470 | 388004 | 395750 |
| 32.79% | 8.75% | 8.53% | 32.55% | 8.64% | 8.81% | 32.58% | 8.63% | 8.80% |
| Chromosome considered: 8 | Chromosome considered: 8 | Chromosome considered: 8 | ||||||
| Total mut: 4264059 | Total mut: 75720475 | Total mut: 20758104 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 344802 | 751529 | 255938 | 5780648 | 12551526 | 4189068 | 1592308 | 3454627 | 1152871 |
| 8.09% | 17.62% | 6.00% | 7.63% | 16.58% | 5.53% | 7.67% | 16.64% | 5.55% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 129517 | 122736 | 527016 | 2473640 | 2460520 | 10382768 | 673287 | 670989 | 2831781 |
| 3.04% | 2.88% | 12.36% | 3.27% | 3.25% | 13.71% | 3.24% | 3.23% | 13.64% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 528085 | 122830 | 130268 | 10391327 | 2463884 | 2476245 | 2830721 | 671933 | 674229 |
| 12.38% | 2.88% | 3.06% | 13.72% | 3.25% | 3.27% | 13.64% | 3.24% | 3.25% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 256172 | 751191 | 343975 | 4198286 | 12557814 | 5794749 | 1156013 | 3455713 | 1593632 |
| 6.01% | 17.62% | 8.07% | 5.54% | 16.58% | 7.65% | 5.57% | 16.65% | 7.68% |
| Total CpG mut: 452232 | Total CpG mut: 18907329 | Total CpG mut: 5017199 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 42023 | 38417 | 145372 | 1669342 | 1629559 | 6155307 | 442777 | 432402 | 1632860 |
| 9.29% | 8.49% | 32.15% | 8.83% | 8.62% | 32.56% | 8.83% | 8.62% | 32.55% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 145436 | 38831 | 42153 | 6154315 | 1633180 | 1665626 | 1634555 | 432875 | 441730 |
| 32.16% | 8.59% | 9.32% | 32.55% | 8.64% | 8.81% | 32.58% | 8.63% | 8.80% |
| Chromosome considered: 9 | Chromosome considered: 9 | Chromosome considered: 9 | ||||||
| Total mut: 4307566 | Total mut: 84658165 | Total mut: 23234053 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 345838 | 751358 | 247064 | 6470084 | 14047680 | 4687565 | 1783208 | 3869317 | 1290224 |
| 8.03% | 17.44% | 5.74% | 7.64% | 16.59% | 5.54% | 7.67% | 16.65% | 5.55% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 127508 | 131353 | 548573 | 2760438 | 2747059 | 11585563 | 753289 | 750544 | 3166134 |
| 2.96% | 3.05% | 12.74% | 3.26% | 3.24% | 13.69% | 3.24% | 3.23% | 13.63% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 551480 | 132299 | 129495 | 11600099 | 2749882 | 2764057 | 3166080 | 751073 | 754026 |
| 12.80% | 3.07% | 3.01% | 13.70% | 3.25% | 3.26% | 13.63% | 3.23% | 3.25% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 246227 | 748419 | 347952 | 4699413 | 14058695 | 6487630 | 1293974 | 3871095 | 1785089 |
| 5.72% | 17.37% | 8.08% | 5.55% | 16.61% | 7.66% | 5.57% | 16.66% | 7.68% |
| Total CpG mut: 503825 | Total CpG mut: 20898270 | Total CpG mut: 5568867 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 44544 | 43280 | 164451 | 1844816 | 1801206 | 6803783 | 491296 | 479927 | 1812520 |
| 8.84% | 8.59% | 32.64% | 8.83% | 8.62% | 32.56% | 8.82% | 8.62% | 32.55% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 164628 | 42712 | 44210 | 6801910 | 1805743 | 1840812 | 1813962 | 481044 | 490118 |
| 32.68% | 8.48% | 8.77% | 32.55% | 8.64% | 8.81% | 32.57% | 8.64% | 8.80% |
| Chromosome considered: 10 | Chromosome considered: 10 | Chromosome considered: 10 | ||||||
| Total mut: 2040392 | Total mut: 88860175 | Total mut: 24227250 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 200476 | 383881 | 110501 | 6787959 | 14739410 | 4918641 | 1858630 | 4033141 | 1345020 |
| 9.83% | 18.81% | 5.42% | 7.64% | 16.59% | 5.54% | 7.67% | 16.65% | 5.55% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 50420 | 64686 | 212135 | 2899839 | 2884325 | 12167796 | 785893 | 782548 | 3302679 |
| 2.47% | 3.17% | 10.40% | 3.26% | 3.25% | 13.69% | 3.24% | 3.23% | 13.63% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 211316 | 63861 | 50078 | 12182052 | 2887662 | 2903044 | 3303092 | 783464 | 786816 |
| 10.36% | 3.13% | 2.45% | 13.71% | 3.25% | 3.27% | 13.63% | 3.23% | 3.25% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 111274 | 381888 | 199876 | 4930174 | 14751902 | 6807371 | 1348712 | 4036020 | 1861235 |
| 5.45% | 18.72% | 9.80% | 5.55% | 16.60% | 7.66% | 5.57% | 16.66% | 7.68% |
| Total CpG mut: 217225 | Total CpG mut: 22193973 | Total CpG mut: 5864613 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 18591 | 22319 | 68081 | 1958857 | 1912764 | 7225596 | 517120 | 505492 | 1908783 |
| 8.56% | 10.27% | 31.34% | 8.83% | 8.62% | 32.56% | 8.82% | 8.62% | 32.55% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 67346 | 22396 | 18492 | 7224645 | 1917142 | 1954969 | 1910762 | 506435 | 516021 |
| 31.00% | 10.31% | 8.51% | 32.55% | 8.64% | 8.81% | 32.58% | 8.64% | 8.80% |
| Chromosome considered: 11 | Chromosome considered: 11 | Chromosome considered: 11 | ||||||
| Total mut: 2283812 | Total mut: 93581940 | Total mut: 25422266 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 199243 | 414996 | 134339 | 7156995 | 15542098 | 5186577 | 1952315 | 4236473 | 1413225 |
| 8.72% | 18.17% | 5.88% | 7.65% | 16.61% | 5.54% | 7.68% | 16.66% | 5.56% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 65026 | 67109 | 258421 | 3047993 | 3031829 | 12788353 | 823038 | 820086 | 3459289 |
| 2.85% | 2.94% | 11.32% | 3.26% | 3.24% | 13.67% | 3.24% | 3.23% | 13.61% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 256990 | 67304 | 64496 | 12802847 | 3035511 | 3050420 | 3460260 | 820794 | 823971 |
| 11.25% | 2.95% | 2.82% | 13.68% | 3.24% | 3.26% | 13.61% | 3.23% | 3.24% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 135640 | 419606 | 200642 | 5200890 | 15558677 | 7179750 | 1417255 | 4240061 | 1955499 |
| 5.94% | 18.37% | 8.79% | 5.56% | 16.63% | 7.67% | 5.57% | 16.68% | 7.69% |
| Total CpG mut: 230040 | Total CpG mut: 23422551 | Total CpG mut: 6165286 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 21289 | 21517 | 72274 | 2067551 | 2018794 | 7625428 | 543668 | 531456 | 2006477 |
| 9.25% | 9.35% | 31.42% | 8.83% | 8.62% | 32.56% | 8.82% | 8.62% | 32.54% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 72252 | 21597 | 21111 | 7625016 | 2023005 | 2062757 | 2008610 | 532538 | 542537 |
| 31.41% | 9.39% | 9.18% | 32.55% | 8.64% | 8.81% | 32.58% | 8.64% | 8.80% |
| Chromosome considered: 12 | Chromosome considered: 12 | Chromosome considered: 12 | ||||||
| Total mut: 1856006 | Total mut: 97349502 | Total mut: 26435404 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 173145 | 346363 | 90612 | 7421290 | 16116862 | 5377694 | 2023129 | 4390196 | 1464386 |
| 9.33% | 18.66% | 4.88% | 7.62% | 16.56% | 5.52% | 7.65% | 16.61% | 5.54% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 46047 | 66679 | 207435 | 3185369 | 3168452 | 13364610 | 860105 | 856855 | 3614270 |
| 2.48% | 3.59% | 11.18% | 3.27% | 3.25% | 13.73% | 3.25% | 3.24% | 13.67% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 207851 | 67312 | 46666 | 13381112 | 3172507 | 3187871 | 3616446 | 857665 | 860814 |
| 11.20% | 3.63% | 2.51% | 13.75% | 3.26% | 3.27% | 13.68% | 3.24% | 3.26% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 89397 | 341946 | 172553 | 5393890 | 16134251 | 7445594 | 1469133 | 4395590 | 2026815 |
| 4.82% | 18.42% | 9.30% | 5.54% | 16.57% | 7.65% | 5.56% | 16.63% | 7.67% |
| Total CpG mut: 266141 | Total CpG mut: 24863964 | Total CpG mut: 6547454 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 21236 | 28644 | 83002 | 2194478 | 2143416 | 8094869 | 577395 | 564470 | 2130753 |
| 7.98% | 10.76% | 31.19% | 8.83% | 8.62% | 32.56% | 8.82% | 8.62% | 32.54% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 82918 | 29115 | 21226 | 8094570 | 2147297 | 2189334 | 2133523 | 565176 | 576137 |
| 31.16% | 10.94% | 7.98% | 32.56% | 8.64% | 8.81% | 32.59% | 8.63% | 8.80% |
| Chromosome considered: 13 | Chromosome considered: 13 | Chromosome considered: 13 | ||||||
| Total mut: 6022680 | Total mut: 109920053 | Total mut: 29931992 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 404825 | 963121 | 372206 | 8408671 | 18257895 | 6093100 | 2298153 | 4985144 | 1663760 |
| 6.72% | 15.99% | 6.18% | 7.65% | 16.61% | 5.54% | 7.68% | 16.65% | 5.56% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 216686 | 174526 | 881047 | 3579220 | 3558574 | 15011574 | 968964 | 965579 | 4071336 |
| 3.60% | 2.90% | 14.63% | 3.26% | 3.24% | 13.66% | 3.24% | 3.23% | 13.60% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 881898 | 174964 | 216875 | 15026698 | 3562518 | 3580747 | 4073262 | 966596 | 969669 |
| 14.64% | 2.91% | 3.60% | 13.67% | 3.24% | 3.26% | 13.61% | 3.23% | 3.24% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 372310 | 959273 | 404949 | 6113728 | 18286926 | 8440402 | 1669797 | 4995503 | 2304229 |
| 6.18% | 15.93% | 6.72% | 5.56% | 16.64% | 7.68% | 5.58% | 16.69% | 7.70% |
| Total CpG mut: 791778 | Total CpG mut: 27164298 | Total CpG mut: 7170690 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 73302 | 58257 | 263998 | 2397470 | 2341150 | 8844215 | 632396 | 618004 | 2333651 |
| 9.26% | 7.36% | 33.34% | 8.83% | 8.62% | 32.56% | 8.82% | 8.62% | 32.54% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 265061 | 58327 | 72833 | 8843695 | 2345656 | 2392112 | 2336704 | 618839 | 631096 |
| 33.48% | 7.37% | 9.20% | 32.56% | 8.64% | 8.81% | 32.59% | 8.63% | 8.80% |
| Chromosome considered: 14 | Chromosome considered: 14 | Chromosome considered: 14 | ||||||
| Total mut: 3940231 | Total mut: 118091543 | Total mut: 32057108 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 307995 | 668170 | 219996 | 9019315 | 19584505 | 6536373 | 2457074 | 5330620 | 1779452 |
| 7.82% | 16.96% | 5.58% | 7.64% | 16.58% | 5.54% | 7.66% | 16.63% | 5.55% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 122564 | 125001 | 526377 | 3853893 | 3831934 | 16164734 | 1039972 | 1037066 | 4371140 |
| 3.11% | 3.17% | 13.36% | 3.26% | 3.24% | 13.69% | 3.24% | 3.24% | 13.64% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 528005 | 125066 | 122024 | 16182427 | 3836589 | 3854752 | 4372661 | 1037830 | 1040764 |
| 13.40% | 3.17% | 3.10% | 13.70% | 3.25% | 3.26% | 13.64% | 3.24% | 3.25% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 220686 | 665483 | 308864 | 6557902 | 19616525 | 9052594 | 1785412 | 5341428 | 2463689 |
| 5.60% | 16.89% | 7.84% | 5.55% | 16.61% | 7.67% | 5.57% | 16.66% | 7.69% |
| Total CpG mut: 590985 | Total CpG mut: 29370986 | Total CpG mut: 7745962 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 49860 | 51164 | 194375 | 2591872 | 2530630 | 9562967 | 682905 | 667235 | 2521285 |
| 8.44% | 8.66% | 32.89% | 8.82% | 8.62% | 32.56% | 8.82% | 8.61% | 32.55% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 194434 | 50754 | 50398 | 9561880 | 2537093 | 2586544 | 2523541 | 668992 | 682004 |
| 32.90% | 8.59% | 8.53% | 32.56% | 8.64% | 8.81% | 32.58% | 8.64% | 8.80% |
| Chromosome considered: 15 | Chromosome considered: 15 | Chromosome considered: 15 | ||||||
| Total mut: 4390246 | Total mut: 127243154 | Total mut: 34770946 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 315132 | 729410 | 272127 | 9740339 | 21150254 | 7057535 | 2672129 | 5797259 | 1934749 |
| 7.18% | 16.61% | 6.20% | 7.65% | 16.62% | 5.55% | 7.68% | 16.67% | 5.56% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 149545 | 125348 | 602532 | 4137738 | 4114843 | 17358530 | 1123568 | 1120191 | 4722063 |
| 3.41% | 2.86% | 13.72% | 3.25% | 3.23% | 13.64% | 3.23% | 3.22% | 13.58% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 603760 | 124955 | 148321 | 17378705 | 4120300 | 4139105 | 4725914 | 1121651 | 1124214 |
| 13.75% | 2.85% | 3.38% | 13.66% | 3.24% | 3.25% | 13.59% | 3.23% | 3.23% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 270847 | 731501 | 316768 | 7082594 | 21187071 | 9776140 | 1941622 | 5808821 | 2678765 |
| 6.17% | 16.66% | 7.22% | 5.57% | 16.65% | 7.68% | 5.58% | 16.71% | 7.70% |
| Total CpG mut: 538599 | Total CpG mut: 31035072 | Total CpG mut: 8227585 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 50434 | 42472 | 176510 | 2738897 | 2674614 | 10103550 | 725492 | 708954 | 2677635 |
| 9.36% | 7.89% | 32.77% | 8.83% | 8.62% | 32.56% | 8.82% | 8.62% | 32.54% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 176147 | 42838 | 50198 | 10103895 | 2680804 | 2733312 | 2680420 | 710814 | 724270 |
| 32.70% | 7.95% | 9.32% | 32.56% | 8.64% | 8.81% | 32.58% | 8.64% | 8.80% |
| Chromosome considered: 16 | Chromosome considered: 16 | Chromosome considered: 16 | ||||||
| Total mut: 2704483 | Total mut: 132870149 | Total mut: 36498699 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 205511 | 449254 | 160486 | 10184917 | 22111870 | 7378621 | 2808211 | 6092700 | 2033372 |
| 7.60% | 16.61% | 5.93% | 7.67% | 16.64% | 5.55% | 7.69% | 16.69% | 5.57% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 88061 | 80610 | 361167 | 4314793 | 4290663 | 18100387 | 1178146 | 1174447 | 4951041 |
| 3.26% | 2.98% | 13.35% | 3.25% | 3.23% | 13.62% | 3.23% | 3.22% | 13.56% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 362311 | 81136 | 86728 | 18119789 | 4295639 | 4314974 | 4953657 | 1175768 | 1178302 |
| 13.40% | 3.00% | 3.21% | 13.64% | 3.23% | 3.25% | 13.57% | 3.22% | 3.23% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 162580 | 459777 | 206862 | 7401529 | 22140691 | 10216276 | 2039380 | 6100442 | 2813233 |
| 6.01% | 17.00% | 7.65% | 5.57% | 16.66% | 7.69% | 5.59% | 16.71% | 7.71% |
| Total CpG mut: 327932 | Total CpG mut: 32080437 | Total CpG mut: 8543476 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 30079 | 26564 | 107802 | 2831324 | 2764464 | 10443808 | 753533 | 736023 | 2780325 |
| 9.17% | 8.10% | 32.87% | 8.83% | 8.62% | 32.56% | 8.82% | 8.62% | 32.54% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 107324 | 26852 | 29311 | 10444602 | 2770925 | 2825314 | 2783743 | 737842 | 752010 |
| 32.73% | 8.19% | 8.94% | 32.56% | 8.64% | 8.81% | 32.58% | 8.64% | 8.80% |
| Chromosome considered: 17 | Chromosome considered: 17 | Chromosome considered: 17 | ||||||
| Total mut: 626875 | Total mut: 134156818 | Total mut: 36614219 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 50800 | 109863 | 35844 | 10279167 | 22316514 | 7446703 | 2816837 | 6111648 | 2039573 |
| 8.10% | 17.53% | 5.72% | 7.66% | 16.63% | 5.55% | 7.69% | 16.69% | 5.57% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 19302 | 20663 | 77334 | 4359214 | 4334745 | 18287100 | 1182098 | 1178249 | 4967523 |
| 3.08% | 3.30% | 12.34% | 3.25% | 3.23% | 13.63% | 3.23% | 3.22% | 13.57% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 76556 | 20687 | 18939 | 18307730 | 4339797 | 4359299 | 4970001 | 1179653 | 1182209 |
| 12.21% | 3.30% | 3.02% | 13.65% | 3.23% | 3.25% | 13.57% | 3.22% | 3.23% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 35999 | 110274 | 50614 | 7470082 | 22345394 | 10311073 | 2045651 | 6118962 | 2821815 |
| 5.74% | 17.59% | 8.07% | 5.57% | 16.66% | 7.69% | 5.59% | 16.71% | 7.71% |
| Total CpG mut: 88873 | Total CpG mut: 33283492 | Total CpG mut: 8644628 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 7802 | 8894 | 27965 | 2937727 | 2868154 | 10835389 | 762378 | 744792 | 2813241 |
| 8.78% | 10.01% | 31.47% | 8.83% | 8.62% | 32.55% | 8.82% | 8.62% | 32.54% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 27790 | 8636 | 7786 | 10835673 | 2875282 | 2931267 | 2816280 | 746899 | 761038 |
| 31.27% | 9.72% | 8.76% | 32.56% | 8.64% | 8.81% | 32.58% | 8.64% | 8.80% |
| Chromosome considered: 18 | Chromosome considered: 18 | Chromosome considered: 18 | ||||||
| Total mut: 1914178 | Total mut: 138097106 | Total mut: 37778892 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 170495 | 353845 | 100524 | 10576276 | 22963417 | 7661943 | 2904740 | 6303311 | 2103330 |
| 8.91% | 18.49% | 5.25% | 7.66% | 16.63% | 5.55% | 7.69% | 16.68% | 5.57% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 50073 | 60149 | 219412 | 4490212 | 4465388 | 18837800 | 1220843 | 1216804 | 5129428 |
| 2.62% | 3.14% | 11.46% | 3.25% | 3.23% | 13.64% | 3.23% | 3.22% | 13.58% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 220754 | 60088 | 49305 | 18858432 | 4470193 | 4490384 | 5132232 | 1218213 | 1220903 |
| 11.53% | 3.14% | 2.58% | 13.66% | 3.24% | 3.25% | 13.58% | 3.22% | 3.23% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 101339 | 358086 | 170108 | 7685220 | 22989451 | 10608390 | 2109548 | 6309875 | 2909665 |
| 5.29% | 18.71% | 8.89% | 5.57% | 16.65% | 7.68% | 5.58% | 16.70% | 7.70% |
| Total CpG mut: 221904 | Total CpG mut: 34336176 | Total CpG mut: 8946964 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 18621 | 21665 | 70523 | 3030765 | 2959285 | 11178154 | 789343 | 771010 | 2911519 |
| 8.39% | 9.76% | 31.78% | 8.83% | 8.62% | 32.56% | 8.82% | 8.62% | 32.54% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 70726 | 21678 | 18691 | 11177818 | 2966286 | 3023868 | 2914316 | 772994 | 787782 |
| 31.87% | 9.77% | 8.42% | 32.55% | 8.64% | 8.81% | 32.57% | 8.64% | 8.81% |
| Chromosome considered: X | Chromosome considered: X | Chromosome considered: X | ||||||
| Total mut: 2391815 | Total mut: 143058216 | Total mut: 38756417 | ||||||
| #AC | AG | AT | #AC | AG | AT | #AC | AG | AT |
| 186393 | 402428 | 136808 | 10964826 | 23807671 | 7943740 | 2980874 | 6468624 | 2158726 |
| 7.79% | 16.83% | 5.72% | 7.66% | 16.64% | 5.55% | 7.69% | 16.69% | 5.57% |
| #CA | CG | CT | #CA | CG | CT | #CA | CG | CT |
| 82734 | 74591 | 312614 | 4646074 | 4619796 | 19492132 | 1251533 | 1247203 | 5258865 |
| 3.46% | 3.12% | 13.07% | 3.25% | 3.23% | 13.63% | 3.23% | 3.22% | 13.57% |
| #GA | GC | GT | #GA | GC | GT | #GA | GC | GT |
| 314421 | 74234 | 81941 | 19512673 | 4625104 | 4645822 | 5262373 | 1249188 | 1251704 |
| 13.15% | 3.10% | 3.43% | 13.64% | 3.23% | 3.25% | 13.58% | 3.22% | 3.23% |
| #TA | TC | TG | #TA | TC | TG | #TA | TC | TG |
| 137948 | 400352 | 187351 | 7967929 | 23834650 | 10997799 | 2164914 | 6476095 | 2986318 |
| 5.77% | 16.74% | 7.83% | 5.57% | 16.66% | 7.69% | 5.59% | 16.71% | 7.71% |
| Total CpG mut: 271861 | Total CpG mut: 35793648 | Total CpG mut: 9251437 | ||||||
| #CA | CG | CT (CpG) | #CA | CG | CT (CpG) | #CA | CG | CT (CpG) |
| 25187 | 22089 | 88836 | 3159068 | 3084813 | 11652668 | 816296 | 797065 | 3010571 |
| 9.26% | 8.13% | 32.68% | 8.83% | 8.62% | 32.56% | 8.82% | 8.62% | 32.54% |
| #GA | GC | GT (CpG) | #GA | GC | GT (CpG) | #GA | GC | GT (CpG) |
| 88744 | 22049 | 24956 | 11652835 | 3092004 | 3152260 | 3013705 | 799297 | 814503 |
| 32.64% | 8.11% | 9.18% | 32.56% | 8.64% | 8.81% | 32.58% | 8.64% | 8.80% |